Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
9
total RNA-seq
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
11
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
3
control
3
nucleotide modification
Date released
16
August, 2021
6
November, 2020
5
February, 2023
2
March, 2023
Available data
9
tsv
1
bedpe bed3+
1
hic
1
vcf
Organism
27
Homo sapiens
Biosample type
447
primary cell
312
tissue
29
cell line
17
in vitro differentiated cells
2
stem cell
Organ
13
liver
6
epithelium
6
pancreas
2
kidney
Project
22
AMP
5
T1D
2
community
Genome assembly (visualization)
1
hg19
Lab
AMP-T2D consortium
16
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
7
inconsistent ontology term
lab.title!
AMP-T2D consortium
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
29 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
9
2
1
1
EndoC_BH1
6
3
2
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
Download