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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
152
single cell RNA-seq
137
ATAC-seq
82
snATAC-seq
81
ChIP-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Hi-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
81
DNA binding
Target of assay
55
histone
55
histone modification
30
broad histone mark
25
narrow histone mark
17
transcription factor
10
RNA binding protein
9
control
Date released
40
May, 2024
37
May, 2021
4
August, 2021
Available data
40
bed narrowPeak
40
bigWig
Organism
81
Homo sapiens
Biosample type
40
tissue
37
in vitro differentiated cells
4
cell line
Organ
40
heart
4
liver
Project
81
AMP
Genome assembly (visualization)
hg19
124
GRCh38
Lab
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
37
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
lab.title!
AMP-T2D consortium
assay_title!
STARR-seq
assembly!
hg19
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
tissue
left cardiac atrium
40
in vitro differentiated cells
embryonic stem cell
37
cell line
HepG2
4
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