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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ATAC-seq
59
total RNA-seq
18
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
72
DNA accessibility
67
Transcription
18
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
235
May, 2021
May, 2022
163
August, 2021
102
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
40
May, 2024
19
April, 2020
16
January, 2021
14
May, 2023
10
November, 2020
7
August, 2020
5
March, 2019
5
March, 2023
3
October, 2022
1
October, 2017
Available data
80
bed narrowPeak
64
xls
57
txt
16
bigWig
10
tsv
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
163
Homo sapiens
Biosample type
130
tissue
29
cell line
4
in vitro differentiated cells
Organ
128
kidney
29
liver
4
connective tissue
2
pancreas
Project
163
AMP
Genome assembly (visualization)
64
GRCh38
20
hg19
Lab
AMP-T2D consortium
128
Katalin Susztak, Upenn
31
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
lab.title!
AMP-T2D consortium
assay_title!
STARR-seq
month_released!
May, 2022
BIOSAMPLE
ASSAY
163 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
islet of Langerhans
1
1
cell line
HepG2
9
18
1
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
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