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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
188
ATAC-seq
172
ChIP-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Target of assay
5
control
5
nucleotide modification
Date released
17
May, 2021
10
November, 2020
Organism
27
Homo sapiens
Biosample type
16
primary cell
6
cell line
5
tissue
Organ
10
pancreas
6
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
17
T1D
10
AMP
Lab
AMP-T2D consortium
17
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
7
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
27 results
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pCHi-C
MeRIP-seq
primary cell
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
+ See 10 more…
cell line
EndoC_BH1
6
tissue
islet of Langerhans
4
thymus
1
See all biosamples