Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
260
total RNA-seq
212
ChIP-seq
119
single cell RNA-seq
111
ATAC-seq
61
snATAC-seq
17
pCHi-C
10
MeRIP-seq
8
Hi-C
6
WGBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
119
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
47
September, 2023
40
September, 2020
May, 2022
12
February, 2021
10
November, 2020
9
April, 2020
8
August, 2021
3
May, 2023
Available data
34
fastq
19
zippedFastqFolder
8
txt
Organism
129
Homo sapiens
Biosample type
71
tissue
52
primary cell
6
cell line
Organ
58
kidney
10
pancreas
9
lung
6
epithelium
Project
52
HPAP
47
KPMP
21
AMP
9
LungMap
Lab
AMP-T2D consortium
52
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
Audit category:
6
inconsistent ontology term
lab.title!
AMP-T2D consortium
month_released!
May, 2022
BIOSAMPLE
ASSAY
129 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
MeRIP-seq
tissue
kidney
58
lung
9
islet of Langerhans
4
primary cell
Langerhans cell
52
cell line
EndoC_BH1
6
Download