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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
188
ATAC-seq
172
ChIP-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
8
3D chromatin structure
Date released
8
August, 2021
3
October, 2022
1
March, 2019
1
March, 2023
Available data
7
hic
5
bedpe bed3+
3
cool
1
bedpe
Organism
13
Homo sapiens
Biosample type
6
cell line
4
primary cell
3
tissue
Organ
5
pancreas
3
epithelium
3
kidney
3
liver
Project
9
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
AMP-T2D consortium
8
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
3
audit script error
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
13 results
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Hi-C
STARR-seq
cell line
HepG2
1
2
HEK293T
2
Synthesized DNA
1
primary cell
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
islet of Langerhans
2
kidney
1
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