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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
88
ATAC-seq
84
ChIP-seq
1
Hi-C
Assay category
88
DNA accessibility
84
DNA binding
1
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
84
May, 2021
64
August, 2021
11
May, 2023
7
August, 2020
3
September, 2020
2
March, 2019
1
March, 2023
1
October, 2017
Available data
148
bed narrowPeak
95
bigWig
84
bam
84
tagAlign
64
xls
11
fastq
1
bed broadPeak
1
hic
Organism
173
Homo sapiens
Biosample type
95
primary cell
78
tissue
Organ
75
kidney
13
pancreas
10
epithelium
Project
84
T1D
78
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
190
hg19
173
GRCh38
Lab
AMP-T2D consortium
84
Kyle Gaulton, UCSD
75
Katalin Susztak, Upenn
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
lab.title!
AMP-T2D consortium
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
173 results
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ATAC-seq
ChIP-seq
Hi-C
primary cell
monocyte
84
pancreatic alpha cell
7
pancreatic beta cell
3
chondrocytes
1
tissue
kidney
75
islet of Langerhans
3
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