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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
total RNA-seq
172
ChIP-seq
139
ATAC-seq
67
single cell RNA-seq
34
snATAC-seq
17
pCHi-C
10
MeRIP-seq
5
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
194
Transcription
Date released
59
August, 2021
59
May, 2021
45
May, 2020
26
May, 2022
5
February, 2023
Available data
106
tsv
102
bam
98
bigWig
55
txt
6
fastq
2
bed bed3+
Organism
194
Homo sapiens
Biosample type
98
primary cell
82
tissue
9
cell line
5
in vitro differentiated cells
Organ
49
kidney
29
liver
13
pancreas
Project
101
T1D
93
AMP
HPAP
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
115
Kyle Gaulton, UCSD
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
award.project!
HPAP
BIOSAMPLE
ASSAY
194 results
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total RNA-seq
primary cell
monocyte
53
CD8-positive, alpha-beta T cell
4
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
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tissue
kidney
49
liver
20
islet of Langerhans
12
pancreas
1
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
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