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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
total RNA-seq
152
single cell RNA-seq
ATAC-seq
64
snATAC-seq
58
ChIP-seq
47
WGBS
10
MeRIP-seq
8
Hi-C
5
STARR-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
327
Transcription
64
DNA accessibility
58
DNA binding
47
DNA methylation
8
3D chromatin structure
1
DNA sequencing
Target of assay
38
histone
38
histone modification
21
broad histone mark
17
narrow histone mark
16
transcription factor
9
control
6
RNA binding protein
5
nucleotide modification
Date released
115
May, 2022
100
August, 2021
76
February, 2023
56
September, 2020
47
September, 2023
45
February, 2021
40
May, 2024
19
April, 2020
10
November, 2020
5
March, 2023
3
May, 2023
3
October, 2022
1
March, 2019
Available data
159
fastq
114
zippedFastqFolder
57
txt
54
bed narrowPeak
54
bigWig
16
tsv
7
hic
5
bedpe bed3+
3
cool
1
bedpe
1
vcf
Organism
515
Homo sapiens
Biosample type
276
primary cell
200
tissue
42
cell line
in vitro differentiated cells
2
stem cell
Organ
116
kidney
116
pancreas
109
epithelium
51
liver
40
heart
19
lung
Project
275
HPAP
174
AMP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
41
GRCh38
20
hg19
Lab
AMP-T2D consortium
275
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
7
inconsistent ontology term
lab.title!
AMP-T2D consortium
Kyle Gaulton, UCSD
biosample_type!
in vitro differentiated cells
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
520 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
WGBS
MeRIP-seq
Hi-C
STARR-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
1
exocrine cell
39
pancreatic beta cell
11
16
1
chondrocytes
1
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tissue
kidney
49
58
6
1
left cardiac atrium
40
liver
20
lung
9
10
islet of Langerhans
1
4
2
cell line
HepG2
9
18
1
2
1
EndoC_BH1
6
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
stem cell
SB Ad3.1
1
1
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