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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
281
total RNA-seq
178
ATAC-seq
175
ChIP-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
175
DNA binding
Target of assay
152
histone
152
histone modification
85
broad histone mark
67
narrow histone mark
16
transcription factor
7
control
6
RNA binding protein
Date released
117
May, 2021
40
May, 2024
18
August, 2021
Available data
171
bigWig
168
bed narrowPeak
84
bam
84
tagAlign
Organism
175
Homo sapiens
Biosample type
117
primary cell
40
tissue
in vitro differentiated cells
18
cell line
Organ
40
heart
18
liver
Project
91
AMP
84
T1D
Genome assembly (visualization)
131
hg19
124
GRCh38
Lab
AMP-T2D consortium
117
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
18
Bing Ren, UCSD
lab.title!
AMP-T2D consortium
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
175 results
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Clear Filters
ChIP-seq
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
33
tissue
left cardiac atrium
40
cell line
HepG2
18
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