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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
ATAC-seq
175
ChIP-seq
82
snATAC-seq
41
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
whole genome sequencing assay
Assay category
Transcription
260
DNA accessibility
175
DNA binding
41
DNA methylation
8
3D chromatin structure
1
DNA sequencing
Target of assay
152
histone
152
histone modification
85
broad histone mark
67
narrow histone mark
16
transcription factor
12
control
6
RNA binding protein
5
nucleotide modification
Date released
139
May, 2022
134
May, 2021
97
August, 2021
40
May, 2024
27
February, 2021
18
February, 2023
16
January, 2021
11
May, 2023
10
April, 2020
10
November, 2020
7
August, 2020
5
March, 2019
3
October, 2022
3
September, 2020
1
March, 2023
1
October, 2017
Available data
270
bed narrowPeak
202
bigWig
103
bam
101
zippedFastqFolder
84
tagAlign
64
xls
63
fastq
7
hic
tsv
5
bedpe bed3+
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
521
Homo sapiens
Biosample type
283
primary cell
203
tissue
in vitro differentiated cells
36
cell line
Organ
149
pancreas
99
epithelium
84
kidney
42
liver
40
heart
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
235
AMP
141
HPAP
135
T1D
10
LungMap
1
ITG
Genome assembly (visualization)
213
GRCh38
178
hg19
Lab
AMP-T2D consortium
186
Kyle Gaulton, UCSD
141
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
8
inconsistent ontology term
lab.title!
AMP-T2D consortium
biosample_type!
in vitro differentiated cells
files.file_type!
tsv
assay_slims!
Transcription
BIOSAMPLE
ASSAY
522 results
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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
MeRIP-seq
Hi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
whole genome sequencing assay
primary cell
monocyte
84
1
pancreatic alpha cell
29
25
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
1
pancreatic beta cell
16
16
1
+ See 16 more…
tissue
kidney
75
6
1
islet of Langerhans
34
6
4
2
left cardiac atrium
40
liver
20
lung
10
+ See 2 more…
cell line
HepG2
18
1
2
1
EndoC_BH1
6
3
2
HEK293T
2
Synthesized DNA
1
See all biosamples
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