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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
98
total RNA-seq
31
ATAC-seq
Assay category
131
DNA binding
98
Transcription
31
DNA accessibility
Target of assay
117
histone
117
histone modification
65
broad histone mark
52
narrow histone mark
11
transcription factor
3
control
1
RNA binding protein
Date released
170
May, 2021
45
May, 2020
20
May, 2022
14
August, 2021
7
August, 2020
3
September, 2020
1
October, 2017
Available data
260
bigWig
230
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
64
xls
63
txt
7
hic
5
bedpe bed3+
3
cool
2
bed bed3+
2
bed broadPeak
1
bedpe
1
vcf
Organism
260
Homo sapiens
Biosample type
225
primary cell
21
tissue
14
cell line
in vitro differentiated cells
Organ
34
liver
11
pancreas
10
epithelium
Project
180
T1D
70
AMP
10
HPAP
Genome assembly (visualization)
250
hg19
191
GRCh38
Lab
AMP-T2D consortium
215
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
10
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
260 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
+ See 22 more…
tissue
liver
20
islet of Langerhans
1
cell line
HepG2
14
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