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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
113
ATAC-seq
98
total RNA-seq
Assay category
171
DNA binding
113
DNA accessibility
98
Transcription
Target of assay
152
histone
152
histone modification
85
broad histone mark
67
narrow histone mark
16
transcription factor
6
RNA binding protein
3
control
Date released
170
May, 2021
78
August, 2021
45
May, 2020
40
May, 2024
38
May, 2022
7
August, 2020
3
September, 2020
1
October, 2017
Available data
300
bigWig
270
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
64
xls
63
txt
7
hic
5
bedpe bed3+
3
cool
2
bed bed3+
2
bed broadPeak
1
bedpe
1
vcf
Organism
382
Homo sapiens
Biosample type
225
primary cell
143
tissue
14
cell line
in vitro differentiated cells
Organ
64
kidney
40
heart
34
liver
29
pancreas
10
epithelium
Project
192
AMP
180
T1D
10
HPAP
Genome assembly (visualization)
295
GRCh38
268
hg19
Lab
AMP-T2D consortium
233
Kyle Gaulton, UCSD
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
10
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
382 results
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ChIP-seq
ATAC-seq
total RNA-seq
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
+ See 22 more…
tissue
kidney
64
left cardiac atrium
40
liver
20
islet of Langerhans
19
cell line
HepG2
14
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