Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ATAC-seq
96
total RNA-seq
95
ChIP-seq
67
single cell RNA-seq
26
snATAC-seq
10
MeRIP-seq
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
pCHi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
96
Transcription
Date released
59
August, 2021
26
May, 2022
6
May, 2021
5
February, 2023
Available data
55
txt
10
tsv
6
bam
6
fastq
Organism
96
Homo sapiens
Biosample type
primary cell
82
tissue
9
cell line
5
in vitro differentiated cells
Organ
49
kidney
29
liver
13
pancreas
Project
91
AMP
5
T1D
Lab
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
17
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
lab.title!
AMP-T2D consortium
biosample_type!
primary cell
BIOSAMPLE
ASSAY
96 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
tissue
kidney
49
liver
20
islet of Langerhans
12
pancreas
1
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
Download