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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
14
total RNA-seq
10
ATAC-seq
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
55
DNA binding
16
Transcription
10
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
23
histone
23
histone modification
23
transcription factor
12
control
12
narrow histone mark
11
broad histone mark
6
RNA binding protein
3
nucleotide modification
Date released
47
May, 2021
38
August, 2021
8
February, 2023
6
November, 2020
2
March, 2023
Available data
24
bigWig
18
bed narrowPeak
9
tsv
3
bed bedgraph
3
txt
2
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
99
Homo sapiens
Biosample type
564
primary cell
312
tissue
54
in vitro differentiated cells
47
cell line
2
stem cell
Organ
31
liver
6
epithelium
6
pancreas
4
connective tissue
2
kidney
Project
94
AMP
5
T1D
2
community
Genome assembly (visualization)
27
hg19
Lab
AMP-T2D consortium
52
Kyle Gaulton, UCSD
34
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
8
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
101 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
Hi-C
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
in vitro differentiated cells
embryonic stem cell
37
5
6
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
18
9
2
1
1
EndoC_BH1
6
3
2
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
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