Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
9
total RNA-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
HiChIP
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
14
DNA binding
11
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
control
3
histone
3
histone modification
3
nucleotide modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
30
August, 2021
5
February, 2023
3
November, 2020
2
March, 2023
Available data
14
bed narrowPeak
14
bigWig
9
tsv
1
bedpe bed3+
1
hic
1
vcf
Organism
38
Homo sapiens
Biosample type
561
primary cell
310
tissue
49
in vitro differentiated cells
40
cell line
2
stem cell
Organ
27
liver
3
epithelium
3
pancreas
2
kidney
Project
33
AMP
5
T1D
2
community
Genome assembly (visualization)
15
hg19
Lab
AMP-T2D consortium
30
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
target.investigated_as!
control
BIOSAMPLE
ASSAY
40 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
MeRIP-seq
HiChIP
Hi-C
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
14
9
2
1
1
EndoC_BH1
3
3
2
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
See all biosamples
Download