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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
98
total RNA-seq
51
single cell RNA-seq
41
WGBS
39
ATAC-seq
29
snATAC-seq
16
pCHi-C
4
Hi-C
Assay category
149
Transcription
117
DNA binding
68
DNA accessibility
41
DNA methylation
4
3D chromatin structure
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
186
May, 2021
134
May, 2022
45
May, 2020
18
September, 2020
8
January, 2021
3
October, 2022
1
March, 2023
Available data
225
bigWig
180
bam
fastq
153
zippedFastqFolder
114
bed narrowPeak
102
tsv
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
2
bed bed3+
Organism
395
Homo sapiens
Biosample type
395
primary cell
286
tissue
54
in vitro differentiated cells
47
cell line
2
stem cell
Organ
83
epithelium
83
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
204
T1D
155
HPAP
35
AMP
1
ITG
Genome assembly (visualization)
218
hg19
181
GRCh38
Lab
AMP-T2D consortium
239
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
5
inconsistent ontology term
3
audit script error
lab.title!
AMP-T2D consortium
files.file_type!
fastq
BIOSAMPLE
ASSAY
395 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
pCHi-C
Hi-C
primary cell
monocyte
84
53
1
Langerhans cell
51
21
pancreatic alpha cell
25
22
1
CD8-positive, alpha-beta T cell
33
4
1
pancreatic beta cell
16
13
1
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