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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
88
ATAC-seq
1
Hi-C
Assay category
96
Transcription
88
DNA accessibility
1
3D chromatin structure
Date released
64
August, 2021
51
May, 2021
45
May, 2020
11
May, 2023
7
August, 2020
3
September, 2020
2
March, 2019
1
March, 2023
1
October, 2017
Available data
191
bigWig
180
bam
148
bed narrowPeak
96
tsv
tagAlign
64
xls
11
fastq
1
bed broadPeak
1
hic
Organism
185
Homo sapiens
Biosample type
107
primary cell
78
tissue
Organ
75
kidney
13
pancreas
10
epithelium
Project
96
T1D
78
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
204
hg19
185
GRCh38
Lab
AMP-T2D consortium
96
Kyle Gaulton, UCSD
75
Katalin Susztak, Upenn
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
185 results
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total RNA-seq
ATAC-seq
Hi-C
primary cell
monocyte
53
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
CD8-positive, alpha-beta T cell
2
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tissue
kidney
75
islet of Langerhans
3
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