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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
231
total RNA-seq
185
ATAC-seq
172
ChIP-seq
144
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
231
Transcription
Date released
81
February, 2023
59
May, 2021
45
May, 2020
20
May, 2022
16
September, 2020
10
August, 2021
Available data
106
tsv
102
bam
98
bigWig
98
fastq
txt
2
bed bed3+
Organism
231
Homo sapiens
Biosample type
190
primary cell
27
tissue
9
cell line
5
in vitro differentiated cells
Organ
60
pancreas
53
epithelium
29
liver
Project
101
T1D
92
HPAP
38
AMP
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
109
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
files.file_type!
txt
BIOSAMPLE
ASSAY
231 results
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total RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
CD8-positive, alpha-beta T cell
4
+ See 23 more…
tissue
liver
20
islet of Langerhans
6
pancreas
1
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
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