Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
84
ChIP-seq
24
ATAC-seq
1
Hi-C
Assay category
96
Transcription
84
DNA binding
24
DNA accessibility
1
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
135
May, 2021
45
May, 2020
11
May, 2023
7
August, 2020
3
September, 2020
2
March, 2019
1
March, 2023
1
October, 2017
Available data
191
bigWig
180
bam
148
bed narrowPeak
96
tsv
84
tagAlign
xls
11
fastq
1
bed broadPeak
1
hic
Organism
205
Homo sapiens
Biosample type
191
primary cell
14
tissue
Organ
13
pancreas
11
kidney
10
epithelium
Project
180
T1D
14
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
288
hg19
205
GRCh38
Lab
AMP-T2D consortium
180
Kyle Gaulton, UCSD
11
Katalin Susztak, Upenn
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
files.file_type!
xls
BIOSAMPLE
ASSAY
205 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
primary cell
monocyte
53
84
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 23 more…
tissue
kidney
11
islet of Langerhans
3
See all biosamples
Download