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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
total RNA-seq
19
ATAC-seq
Assay category
51
Transcription
19
DNA accessibility
Date released
May, 2021
45
May, 2020
24
May, 2022
1
March, 2019
Available data
195
fastq
153
zippedFastqFolder
120
bed narrowPeak
95
bigWig
70
bam
66
txt
64
xls
61
tsv
7
hic
5
bedpe bed3+
3
bed bedgraph
3
cool
2
bed bed3+
2
bed broadPeak
1
bedpe
1
vcf
Organism
70
Homo sapiens
Biosample type
45
primary cell
25
tissue
Organ
25
pancreas
Project
45
T1D
25
AMP
Genome assembly (visualization)
63
hg19
45
GRCh38
Lab
AMP-T2D consortium
69
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
month_released!
May, 2021
BIOSAMPLE
ASSAY
70 results
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total RNA-seq
ATAC-seq
primary cell
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
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tissue
islet of Langerhans
6
19
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