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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
33
single cell RNA-seq
30
ATAC-seq
27
snATAC-seq
6
WGBS
Assay category
131
Transcription
57
DNA accessibility
6
DNA methylation
Date released
76
February, 2023
45
February, 2021
40
September, 2020
24
May, 2022
7
August, 2020
1
March, 2019
1
October, 2017
Available data
310
bigWig
274
bed narrowPeak
205
bam
195
fastq
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
194
Homo sapiens
Biosample type
168
primary cell
26
tissue
Organ
95
pancreas
69
epithelium
Project
168
HPAP
26
AMP
Genome assembly (visualization)
19
hg19
11
GRCh38
Lab
AMP-T2D consortium
168
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
lab.title!
AMP-T2D consortium
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
194 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
primary cell
Langerhans cell
33
27
pancreatic alpha cell
42
7
6
exocrine cell
39
pancreatic beta cell
11
3
tissue
islet of Langerhans
6
20
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