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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
total RNA-seq
6
WGBS
3
ATAC-seq
Assay category
106
Transcription
6
DNA methylation
3
DNA accessibility
Date released
51
May, 2021
45
May, 2020
10
August, 2021
6
February, 2021
3
February, 2023
Available data
270
bigWig
234
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
115
Homo sapiens
Biosample type
102
primary cell
9
cell line
3
in vitro differentiated cells
1
tissue
Organ
9
liver
7
pancreas
6
epithelium
Project
96
T1D
13
AMP
6
HPAP
Genome assembly (visualization)
99
hg19
96
GRCh38
Lab
AMP-T2D consortium
96
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
6
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
115 results
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total RNA-seq
WGBS
ATAC-seq
primary cell
monocyte
53
pancreatic alpha cell
6
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
+ See 21 more…
cell line
HepG2
9
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
tissue
islet of Langerhans
1
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