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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 233total RNA-seq
  • 172ChIP-seq
  • 152single cell RNA-seq
  • 139ATAC-seq
  • 82snATAC-seq
  • 17pCHi-C
  • 5Hi-C
  • 5STARR-seq
  • 4MeRIP-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 389Transcription
  • 221DNA accessibility
  • 172DNA binding
  • 53D chromatin structure
  • 1DNA sequencing
Target of assay
  • 137histone
  • 137histone modification
  • 75broad histone mark
  • 62narrow histone mark
  • 23transcription factor
  • 14control
  • 6RNA binding protein
  • 2nucleotide modification
Date released
  • 235May, 2021
  • 168August, 2021
  • 118May, 2022
  • 65February, 2023
  • 47September, 2023
  • 45May, 2020
  • 40September, 2020
  • 39February, 2021
  • 19April, 2020
  • 16January, 2021
  • 14May, 2023
  • 5March, 2019
  • 5March, 2023
  • 4November, 2020
  • 1October, 2017
Available data
  • 260bigWig
  • 234bed narrowPeak
  • 205bam
  • 126fastq
  • 106tsv
  • 84tagAlign
  • 73zippedFastqFolder
  • 66txt
  • 64xls
  • 4bed bed3+
  • 4hic
  • 3bed bedgraph
  • 2bed broadPeak
  • 2bedpe bed3+
  • 1bedpe
  • 1vcf
Organism
  • 816Homo sapiens
Biosample type
  • 412primary cell
  • 312tissue
  • 54in vitro differentiated cells
  • 41cell line
  • 2stem cell
Organ
  • 221pancreas
  • 191kidney
  • epithelium
  • 71liver
  • heart
  • 19lung
  • 8blood
  • 8bodily fluid
  • 5connective tissue
  • 1bone element
  • 1bone marrow
  • 1thymus
Project
  • 342AMP
  • 236T1D
  • 172HPAP
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 285hg19
  • 259GRCh38
Lab
  • AMP-T2D consortium
  • 343Kyle Gaulton, UCSD
  • 172Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 38Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
  • 7inconsistent ontology term
lab.title!
  • AMP-T2D consortium
organ_slims!
  • heart
  • epithelium
BIOSAMPLE
ASSAY

821 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
Hi-C
STARR-seq
MeRIP-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
monocyte53841
Langerhans cell8548
exocrine cell39
CD8-positive, alpha-beta T cell4331
peripheral blood mononuclear cell8
tissue
kidney49587561
islet of Langerhans1234624
liver2020
lung910
pancreas14
in vitro differentiated cells
embryonic stem cell5376
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
neuron cell of Hypothalamus (neuron)1
cell line
HepG2918121
EndoC_BH132
EndoC-BH111
HEK293T2
Synthesized DNA1
stem cell
SB Ad3.111
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