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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
96
total RNA-seq
88
ATAC-seq
1
Hi-C
Assay category
124
DNA binding
96
Transcription
88
DNA accessibility
1
3D chromatin structure
Target of assay
119
histone
119
histone modification
64
broad histone mark
55
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
135
May, 2021
64
August, 2021
45
May, 2020
40
May, 2024
11
May, 2023
7
August, 2020
3
September, 2020
2
March, 2019
1
March, 2023
1
October, 2017
Available data
231
bigWig
188
bed narrowPeak
180
bam
96
tsv
84
tagAlign
64
xls
11
fastq
1
bed broadPeak
1
hic
Organism
309
Homo sapiens
Biosample type
191
primary cell
118
tissue
Organ
75
kidney
40
heart
13
pancreas
10
epithelium
Project
180
T1D
118
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
309
GRCh38
288
hg19
Lab
AMP-T2D consortium
180
Kyle Gaulton, UCSD
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
Rohit N. Kulkarni, M.D., Ph.D.
assay_title!
shRNA RNA-seq
BIOSAMPLE
ASSAY
309 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
primary cell
monocyte
84
53
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 23 more…
tissue
kidney
75
left cardiac atrium
40
islet of Langerhans
3
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