Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
118
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
310
Transcription
213
DNA accessibility
212
DNA binding
41
DNA methylation
8
3D chromatin structure
1
DNA sequencing
Date released
67
August, 2021
59
May, 2021
53
May, 2022
47
September, 2023
45
May, 2020
18
September, 2020
9
April, 2020
5
February, 2023
4
March, 2023
3
May, 2023
Available data
fastq
106
tsv
102
bam
98
bigWig
63
txt
52
zippedFastqFolder
2
bed bed3+
Organism
306
Homo sapiens
Biosample type
149
primary cell
143
tissue
11
cell line
5
in vitro differentiated cells
2
stem cell
Organ
107
kidney
29
liver
9
lung
7
pancreas
Project
101
T1D
98
AMP
51
HPAP
47
KPMP
9
LungMap
4
community
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
109
Kyle Gaulton, UCSD
60
Katalin Susztak, Upenn
51
Klaus Kaestner, Upenn
47
KPMP
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
Rohit N. Kulkarni, M.D., Ph.D.
files.file_type!
fastq
BIOSAMPLE
ASSAY
310 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
Langerhans cell
51
CD8-positive, alpha-beta T cell
4
B cell
2
T follicular helper cell
2
+ See 21 more…
tissue
kidney
49
58
liver
20
lung
9
islet of Langerhans
6
pancreas
1
cell line
HepG2
9
EndoC-BH1
1
1
in vitro differentiated cells
embryonic stem cell
5
stem cell
SB Ad3.1
1
1
See all biosamples
Download