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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
total RNA-seq
64
ATAC-seq
6
WGBS
Assay category
106
Transcription
64
DNA accessibility
6
DNA methylation
Date released
74
August, 2021
51
May, 2021
45
May, 2020
6
February, 2021
Available data
310
bigWig
274
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
176
Homo sapiens
Biosample type
102
primary cell
65
tissue
9
cell line
Organ
64
kidney
9
liver
7
pancreas
6
epithelium
Project
96
T1D
74
AMP
6
HPAP
Genome assembly (visualization)
160
GRCh38
96
hg19
Lab
AMP-T2D consortium
96
Kyle Gaulton, UCSD
64
Katalin Susztak, Upenn
10
Bing Ren, UCSD
6
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
176 results
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total RNA-seq
ATAC-seq
WGBS
primary cell
monocyte
53
pancreatic alpha cell
6
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
+ See 21 more…
tissue
kidney
64
islet of Langerhans
1
cell line
HepG2
9
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