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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ATAC-seq
59
total RNA-seq
18
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
76
DNA accessibility
67
Transcription
18
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
235
May, 2021
198
May, 2022
168
August, 2021
102
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
40
May, 2024
19
April, 2020
16
January, 2021
14
May, 2023
7
August, 2020
5
March, 2019
5
March, 2023
3
October, 2022
1
October, 2017
Available data
80
bed narrowPeak
64
xls
57
txt
16
bigWig
10
tsv
3
hic
2
bed bed3+
2
bedpe bed3+
1
bam
1
bed broadPeak
1
bedpe
1
fastq
1
vcf
Organism
173
Homo sapiens
Biosample type
135
tissue
34
cell line
4
in vitro differentiated cells
Organ
130
kidney
31
liver
7
pancreas
4
connective tissue
Project
173
AMP
Genome assembly (visualization)
66
GRCh38
23
hg19
Lab
AMP-T2D consortium
128
Katalin Susztak, Upenn
38
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
173 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
islet of Langerhans
4
1
2
cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
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