Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ATAC-seq
59
total RNA-seq
17
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
72
DNA accessibility
67
Transcription
17
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
broad histone mark
Date released
198
May, 2022
167
August, 2021
161
May, 2021
102
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
20
May, 2024
19
April, 2020
16
January, 2021
14
May, 2023
7
August, 2020
5
March, 2019
5
March, 2023
3
October, 2022
1
October, 2017
Available data
79
bed narrowPeak
64
xls
57
txt
15
bigWig
10
tsv
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
167
Homo sapiens
Biosample type
130
tissue
33
cell line
4
in vitro differentiated cells
Organ
130
kidney
30
liver
4
connective tissue
2
pancreas
Project
167
AMP
Genome assembly (visualization)
64
GRCh38
19
hg19
Lab
AMP-T2D consortium
128
Katalin Susztak, Upenn
35
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
Rohit N. Kulkarni, M.D., Ph.D.
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
167 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
islet of Langerhans
1
1
cell line
HepG2
9
17
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Download