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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
98
total RNA-seq
24
ATAC-seq
2
Hi-C
Assay category
131
DNA binding
98
Transcription
24
DNA accessibility
2
3D chromatin structure
Target of assay
117
histone
117
histone modification
65
broad histone mark
52
narrow histone mark
11
transcription factor
3
control
1
RNA binding protein
Date released
175
May, 2021
45
May, 2020
18
May, 2022
15
August, 2021
2
March, 2019
Available data
234
bigWig
198
bam
146
bed narrowPeak
96
tsv
84
tagAlign
18
fastq
2
bed bed3+
2
hic
1
bedpe
1
bedpe bed3+
Organism
255
Homo sapiens
Biosample type
215
primary cell
20
tissue
15
cell line
5
in vitro differentiated cells
Organ
20
pancreas
15
liver
Project
180
T1D
75
AMP
Genome assembly (visualization)
255
hg19
181
GRCh38
Lab
AMP-T2D consortium
238
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
3
Klaus Kaestner, Upenn
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
255 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 20 more…
tissue
islet of Langerhans
19
1
cell line
HepG2
14
1
in vitro differentiated cells
embryonic stem cell
5
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