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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
227
total RNA-seq
183
ATAC-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
18
ChIP-seq
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
227
Transcription
Date released
81
February, 2023
59
August, 2021
May, 2021
45
May, 2020
26
May, 2022
16
September, 2020
Available data
98
fastq
55
tsv
55
txt
51
bam
45
bigWig
Organism
227
Homo sapiens
Biosample type
137
primary cell
81
tissue
9
cell line
Organ
65
pancreas
53
epithelium
49
kidney
29
liver
Project
92
HPAP
85
AMP
50
T1D
Genome assembly (visualization)
45
GRCh38
45
hg19
Lab
AMP-T2D consortium
92
Klaus Kaestner, Upenn
56
Kyle Gaulton, UCSD
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
month_released!
May, 2021
BIOSAMPLE
ASSAY
227 results
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total RNA-seq
primary cell
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 23 more…
tissue
kidney
49
liver
20
islet of Langerhans
12
cell line
HepG2
9
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