Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ATAC-seq
85
total RNA-seq
18
ChIP-seq
11
single cell RNA-seq
10
MeRIP-seq
6
snATAC-seq
5
STARR-seq
4
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
129
DNA accessibility
96
Transcription
18
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
9
control
5
nucleotide modification
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
168
August, 2021
May, 2021
64
May, 2022
14
May, 2023
10
November, 2020
5
March, 2019
3
February, 2023
1
October, 2017
Available data
120
bed narrowPeak
66
txt
64
xls
40
bigWig
26
fastq
25
bam
10
tsv
3
bed bedgraph
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
1
bedpe
1
vcf
Organism
265
Homo sapiens
Biosample type
218
tissue
40
cell line
7
in vitro differentiated cells
Organ
144
kidney
71
liver
42
pancreas
6
epithelium
4
connective tissue
Project
324
HPAP
265
AMP
84
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
78
GRCh38
65
hg19
Lab
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
24
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
8
inconsistent ontology term
lab.title!
AMP-T2D consortium
month_released!
May, 2021
BIOSAMPLE
ASSAY
265 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
MeRIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
75
49
11
6
1
liver
20
20
islet of Langerhans
23
7
4
2
cell line
HepG2
9
18
2
1
1
EndoC_BH1
6
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
Download