Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
212
ChIP-seq
187
ATAC-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
8
3D chromatin structure
Date released
3
August, 2021
3
October, 2022
1
March, 2019
1
March, 2023
Available data
7
hic
5
bedpe bed3+
3
cool
1
bedpe
Organism
8
Homo sapiens
Biosample type
4
primary cell
3
tissue
1
cell line
Organ
5
pancreas
3
epithelium
1
kidney
1
liver
Project
4
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
3
audit script error
lab.title!
AMP-T2D consortium
month_released!
October, 2017
BIOSAMPLE
ASSAY
8 results
search-icon
table-tab-icon
Clear Filters
Hi-C
primary cell
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
islet of Langerhans
2
kidney
1
cell line
HepG2
1
Download