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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
14
ATAC-seq
12
snATAC-seq
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
90
Transcription
26
DNA accessibility
Date released
235
May, 2021
198
May, 2022
168
August, 2021
102
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
14
May, 2023
10
November, 2020
7
August, 2020
5
March, 2019
5
March, 2023
3
October, 2022
1
October, 2017
Available data
76
fastq
3
bed bedgraph
3
bigWig
3
txt
2
bed narrowPeak
Organism
120
Homo sapiens
Biosample type
76
primary cell
37
tissue
5
cell line
3
in vitro differentiated cells
Organ
55
pancreas
37
epithelium
19
lung
Project
76
HPAP
23
T1D
19
LungMap
3
AMP
Genome assembly (visualization)
3
hg19
Lab
AMP-T2D consortium
76
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
121 results
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total RNA-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
tissue
lung
10
9
islet of Langerhans
5
11
2
cell line
EndoC_BH1
3
2
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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