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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
18
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
ATAC-seq
2
Capture-C
1
whole genome sequencing assay
Assay category
67
Transcription
18
DNA binding
8
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
198
May, 2022
104
August, 2021
102
February, 2023
100
May, 2021
56
September, 2020
47
September, 2023
45
February, 2021
19
April, 2020
16
January, 2021
10
November, 2020
4
March, 2023
3
March, 2019
3
May, 2023
3
October, 2022
Available data
57
txt
16
bed narrowPeak
16
bigWig
10
tsv
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
104
Homo sapiens
Biosample type
66
tissue
34
cell line
4
in vitro differentiated cells
Organ
66
kidney
31
liver
4
connective tissue
2
pancreas
Project
104
AMP
Genome assembly (visualization)
GRCh38
20
hg19
Lab
AMP-T2D consortium
64
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
assembly!
GRCh38
BIOSAMPLE
ASSAY
104 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
ATAC-seq
Capture-C
whole genome sequencing assay
tissue
kidney
49
8
6
1
islet of Langerhans
1
1
cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
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