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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
ATAC-seq
72
snATAC-seq
Assay category
376
Transcription
177
DNA accessibility
172
DNA binding
3
3D chromatin structure
1
DNA sequencing
Date released
72
August, 2021
41
May, 2022
27
February, 2021
11
May, 2023
10
April, 2020
8
January, 2021
5
May, 2021
3
February, 2023
Available data
88
bed narrowPeak
64
xls
30
bigWig
27
fastq
21
zippedFastqFolder
3
bed bedgraph
3
txt
Organism
176
Homo sapiens
Biosample type
111
tissue
56
primary cell
10
in vitro differentiated cells
Organ
pancreas
81
kidney
49
epithelium
20
liver
10
lung
8
blood
8
bodily fluid
2
connective tissue
Project
111
AMP
48
HPAP
10
LungMap
8
T1D
Genome assembly (visualization)
75
GRCh38
30
hg19
Lab
AMP-T2D consortium
81
Katalin Susztak, Upenn
48
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
27
audit script error
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
organ_slims!
pancreas
BIOSAMPLE
ASSAY
177 results
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ATAC-seq
snATAC-seq
tissue
kidney
75
6
liver
20
lung
10
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
in vitro differentiated cells
embryonic stem cell
6
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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