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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ATAC-seq
66
total RNA-seq
47
WGBS
18
snATAC-seq
10
MeRIP-seq
5
Hi-C
Assay category
101
DNA accessibility
66
Transcription
47
DNA methylation
5
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
104
May, 2022
55
February, 2023
19
September, 2020
16
January, 2021
10
November, 2020
7
August, 2020
6
February, 2021
5
March, 2019
3
October, 2022
2
August, 2021
1
May, 2021
1
October, 2017
Available data
95
fastq
80
zippedFastqFolder
25
bam
18
bed narrowPeak
11
bigWig
7
tsv
6
txt
4
bedpe bed3+
4
hic
3
cool
2
bed broadPeak
1
bedpe
Organism
229
Homo sapiens
Biosample type
160
primary cell
63
tissue
6
cell line
Organ
221
pancreas
191
kidney
158
epithelium
71
liver
19
lung
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
152
HPAP
43
AMP
34
T1D
Genome assembly (visualization)
25
hg19
13
GRCh38
Lab
AMP-T2D consortium
152
Klaus Kaestner, Upenn
59
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
3
audit script error
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
229 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
1
tissue
islet of Langerhans
34
12
6
4
2
pancreas
1
4
cell line
EndoC_BH1
6
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