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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
18
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
Hi-C
Assay category
81
Transcription
20
DNA accessibility
1
3D chromatin structure
Date released
223
May, 2021
198
May, 2022
157
August, 2021
102
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
35
May, 2024
19
April, 2020
16
January, 2021
14
May, 2023
10
November, 2020
7
August, 2020
5
March, 2019
5
March, 2023
3
October, 2022
1
October, 2017
Available data
77
fastq
3
bed bedgraph
3
bigWig
3
txt
2
bed narrowPeak
1
bam
1
bed broadPeak
1
bedpe
1
hic
Organism
107
Homo sapiens
Biosample type
76
primary cell
23
tissue
5
cell line
3
in vitro differentiated cells
Organ
60
pancreas
37
epithelium
Project
76
HPAP
23
T1D
8
AMP
Genome assembly (visualization)
6
hg19
2
GRCh38
Lab
AMP-T2D consortium
76
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
107 results
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Clear Filters
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
Hi-C
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
tissue
islet of Langerhans
5
15
2
1
cell line
EndoC_BH1
3
2
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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