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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
114
ChIP-seq
52
single cell RNA-seq
41
ATAC-seq
41
WGBS
21
snATAC-seq
Assay category
114
DNA binding
62
DNA accessibility
52
Transcription
41
DNA methylation
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
134
May, 2022
70
November, 2017
39
August, 2017
19
September, 2020
4
October, 2017
2
October, 2019
1
March, 2019
Available data
3183
bam
2960
bigWig
1608
bed narrowPeak
1600
tsv
1346
fastq
833
bigBed narrowPeak
398
tagAlign
161
txt
153
zippedFastqFolder
116
bed broadPeak
79
bigBed broadPeak
69
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
263
Homo sapiens
Biosample type
174
primary cell
58
cell line
37
tissue
Organ
94
pancreas
86
epithelium
58
liver
15
brain
13
musculature of body
6
vasculature
4
blood vessel
2
vein
1
adipose tissue
1
connective tissue
Project
153
HPAP
116
AMP
Genome assembly (visualization)
115
hg19
77
GRCh38
Lab
153
Klaus Kaestner, Upenn
114
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
lab.title!
Anna Gloyn, Oxford
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
269 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
skeletal muscle myoblast
13
pancreatic acinar cell
4
+ See 4 more…
cell line
HepG2
58
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
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