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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
62
ChIP-seq
Assay category
204
DNA accessibility
62
DNA binding
Target of assay
36
transcription factor
26
histone
26
histone modification
13
broad histone mark
13
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
50
November, 2017
12
August, 2017
9
November, 2018
7
October, 2019
1
November, 2020
Available data
2694
bam
2647
bigWig
1464
bed narrowPeak
1273
tsv
983
bigBed narrowPeak
833
fastq
281
bed broadPeak
266
bigBed broadPeak
239
bed bed3+
228
tagAlign
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
266
Homo sapiens
Biosample type
176
tissue
45
cell line
45
primary cell
in vitro differentiated cells
Organ
78
kidney
49
liver
38
brain
36
limb
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
11
blood vessel
8
connective tissue
7
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
266
AMP
Genome assembly (visualization)
266
GRCh38
261
hg19
Lab
266
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
11
inconsistent control read length
1
inconsistent assembly
lab.title!
Anna Gloyn, Oxford
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
266 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
44
Panc1
1
primary cell
skeletal muscle myoblast
12
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 18 more…
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