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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
62
ChIP-seq
Assay category
196
DNA accessibility
62
DNA binding
Target of assay
36
transcription factor
26
histone
26
histone modification
13
broad histone mark
13
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
50
November, 2017
12
August, 2017
8
November, 2018
7
October, 2019
Available data
2394
bam
2368
bigWig
1561
bed narrowPeak
973
bigBed narrowPeak
926
tsv
876
fastq
273
bed broadPeak
258
bigBed broadPeak
246
tagAlign
239
bed bed3+
64
xls
15
bed bedMethyl
15
bigBed bedMethyl
1
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
258
Homo sapiens
Biosample type
174
tissue
45
cell line
39
primary cell
Organ
78
kidney
49
liver
38
brain
36
limb
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
11
blood vessel
connective tissue
7
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
258
AMP
Genome assembly (visualization)
258
GRCh38
254
hg19
Lab
258
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
11
inconsistent control read length
1
inconsistent assembly
lab.title!
Anna Gloyn, Oxford
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
258 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
cell line
HepG2
44
Panc1
1
primary cell
skeletal muscle myoblast
12
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
endothelial cell of umbilical vein
2
+ See 14 more…
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