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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
258
DNA binding
104
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
309
transcription factor
recombinant protein
58
RNA binding protein
32
histone
32
histone modification
28
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
151
November, 2017
92
February, 2021
42
November, 2018
27
December, 2018
20
January, 2019
13
November, 2019
13
October, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
375
bam
366
bigWig
270
bed narrowPeak
242
bigBed narrowPeak
240
fastq
104
tsv
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
376
Homo sapiens
Biosample type
1819
tissue
536
primary cell
376
cell line
265
in vitro differentiated cells
3
stem cell
Organ
187
liver
64
artery
64
blood vessel
64
heart
64
vasculature
55
pancreas
54
blood
54
bodily fluid
49
epithelium
8
embryo
5
kidney
Project
372
AMP
4
T1D
Genome assembly (visualization)
445
hg19
376
GRCh38
Lab
376
AMP-T2D consortium
Audit category:
50
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
21
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
lab.title!
Anna Gloyn, Oxford
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
376 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
180
5
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
EndoC_BH1
13
33
1
H1-hESC
8
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