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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1278
total RNA-seq
1189
ChIP-seq
460
ATAC-seq
367
single cell RNA-seq
209
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
46
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
1
GRO-seq
Assay category
460
DNA accessibility
Date released
100
May, 2020
91
February, 2023
77
May, 2022
64
August, 2021
20
November, 2019
18
October, 2019
14
September, 2018
13
May, 2021
11
May, 2023
9
February, 2021
8
October, 2017
7
August, 2020
6
July, 2019
5
August, 2017
5
September, 2017
4
March, 2019
3
September, 2020
2
January, 2018
2
March, 2020
1
November, 2020
Available data
247
bed narrowPeak
148
bam
121
bigWig
64
xls
61
fastq
39
zippedFastqFolder
25
bigBed narrowPeak
13
tsv
6
bed bed3
2
bed broadPeak
Organism
460
Homo sapiens
Biosample type
260
tissue
200
primary cell
in vitro differentiated cells
cell line
Organ
133
pancreas
84
epithelium
75
kidney
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
22
liver
12
bone element
12
skeleton
8
connective tissue
8
limb
6
adipose tissue
4
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
400
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
207
GRCh38
206
hg19
Lab
282
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
13
inconsistent ontology term
lab.title!
Anna Gloyn, Oxford
biosample_type!
in vitro differentiated cells
cell line
BIOSAMPLE
ASSAY
460 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
68
coronary artery
36
liver
20
retina
15
+ See 29 more…
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
+ See 34 more…
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