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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
Assay category
436
Transcription
288
DNA accessibility
274
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
234
histone
234
histone modification
120
broad histone mark
114
narrow histone mark
31
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
53
August, 2017
32
September, 2018
31
June, 2019
24
October, 2019
9
November, 2017
May, 2019
4
August, 2021
Available data
243
bigWig
237
bam
222
bed narrowPeak
100
tagAlign
94
fastq
53
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
274
Homo sapiens
Biosample type
792
tissue
484
cell line
274
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
87
epithelium
70
pancreas
23
vasculature
20
blood vessel
17
vein
12
connective tissue
10
kidney
10
musculature of body
9
brain
5
heart
4
liver
3
eye
Project
190
AMP
84
T1D
Genome assembly (visualization)
243
hg19
203
GRCh38
Lab
157
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Anna Gloyn, Oxford
month_released!
May, 2019
BIOSAMPLE
ASSAY
274 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
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