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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
258
DNA binding
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
32
control
5
RNA binding protein
5
transcription factor
Date released
121
May, 2021
40
August, 2017
32
September, 2018
31
June, 2019
22
October, 2019
5
May, 2019
4
August, 2021
3
November, 2017
Available data
247
bigWig
242
bam
226
bed narrowPeak
100
tagAlign
94
fastq
57
bigBed narrowPeak
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
258
Homo sapiens
Biosample type
872
tissue
426
cell line
258
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
86
epithelium
70
pancreas
17
vasculature
16
blood vessel
15
kidney
15
vein
12
connective tissue
10
musculature of body
5
heart
4
liver
3
brain
3
eye
Project
174
AMP
84
T1D
Genome assembly (visualization)
226
hg19
189
GRCh38
Lab
141
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
lab.title!
Anna Gloyn, Oxford
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
258 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
15
pancreatic alpha cell
13
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