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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
47
WGBS
37
ChIP-seq
29
snATAC-seq
16
pCHi-C
10
RRBS
6
Hi-C
2
DNase-seq
1
DNAme array
Assay category
184
Transcription
147
DNA accessibility
58
DNA methylation
37
DNA binding
6
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
57
May, 2021
18
February, 2021
13
July, 2019
8
January, 2021
7
August, 2020
2
October, 2019
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
613
bigWig
bam
382
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
448
Homo sapiens
Biosample type
861
tissue
448
primary cell
101
in vitro differentiated cells
78
cell line
5
stem cell
Organ
160
epithelium
149
pancreas
8
blood
8
bodily fluid
5
kidney
4
brain
4
vasculature
3
blood vessel
3
connective tissue
2
liver
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
1
vein
Project
294
HPAP
129
AMP
24
T1D
1
ITG
Genome assembly (visualization)
50
hg19
11
GRCh38
Lab
294
Klaus Kaestner, Upenn
94
AMP-T2D consortium
59
Kyle Gaulton, UCSD
1
ITG
Audit category:
audit script error
9
inconsistent ontology term
lab.title!
Anna Gloyn, Oxford
audit.ERROR.category!
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
448 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
ChIP-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
Langerhans cell
85
21
pancreatic alpha cell
29
42
31
pancreatic beta cell
16
11
16
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
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