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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
ChIP-seq
139
ATAC-seq
95
single cell RNA-seq
59
total RNA-seq
28
DNase-seq
8
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
170
DNA binding
168
DNA accessibility
156
Transcription
9
DNA methylation
6
3D chromatin structure
Target of assay
136
histone
136
histone modification
70
broad histone mark
66
narrow histone mark
30
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
98
May, 2020
73
September, 2018
59
August, 2017
55
May, 2021
43
April, 2018
42
July, 2018
32
October, 2019
30
June, 2019
29
July, 2019
9
November, 2017
6
February, 2023
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
1
November, 2018
Available data
389
bigWig
388
bam
233
fastq
186
bed narrowPeak
155
tsv
86
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
16
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
510
Homo sapiens
Biosample type
2589
tissue
563
cell line
510
primary cell
279
in vitro differentiated cells
7
stem cell
Organ
244
epithelium
189
pancreas
36
vasculature
31
blood vessel
28
kidney
25
connective tissue
22
vein
21
brain
13
liver
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
510
AMP
324
HPAP
199
T1D
1
ITG
Genome assembly (visualization)
407
hg19
313
GRCh38
Lab
475
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Anna Gloyn, Oxford
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
510 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
13
7
12
10
pancreatic alpha cell
13
6
12
10
CD8-positive, alpha-beta T cell
33
2
2
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
11
4
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