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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
total RNA-seq
5
STARR-seq
3
Hi-C
Assay category
18
DNA binding
10
Transcription
3
3D chromatin structure
DNA accessibility
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
35
August, 2021
1
March, 2019
Available data
14
bed narrowPeak
14
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
vcf
Organism
36
Homo sapiens
Biosample type
33
cell line
3
tissue
Organ
30
liver
3
pancreas
2
kidney
Project
36
AMP
Genome assembly (visualization)
16
hg19
Lab
3350
AMP-T2D consortium
291
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
36
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
1
inconsistent ontology term
lab.title!
Anna Gloyn, Oxford
files.file_type!
vcf
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
cell line
HepG2
18
9
2
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
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