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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
total RNA-seq
722
ChIP-seq
17
WGBS
16
small RNA-seq
Assay category
923
Transcription
722
DNA binding
DNA accessibility
17
DNA methylation
Target of assay
466
histone modification
465
histone
243
narrow histone mark
222
broad histone mark
167
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
193
May, 2020
180
October, 2019
166
August, 2017
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
69
November, 2017
56
July, 2019
48
December, 2017
38
May, 2021
19
November, 2019
16
November, 2018
9
March, 2020
8
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
May, 2022
6
September, 2017
Available data
1662
bam
1548
bigWig
1075
tsv
595
bed narrowPeak
377
bigBed narrowPeak
336
fastq
238
tagAlign
156
txt
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1655
Homo sapiens
Biosample type
1662
tissue
570
cell line
495
primary cell
273
in vitro differentiated cells
3
stem cell
Organ
493
connective tissue
435
adipose tissue
378
pancreas
284
liver
196
brain
101
heart
79
blood vessel
79
vasculature
70
limb
58
bone element
39
nerve
29
kidney
28
artery
22
spleen
12
musculature of body
1
pituitary gland
Project
1660
AMP
2
T1D
Genome assembly (visualization)
1481
GRCh38
1422
hg19
Lab
1656
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Anna Gloyn, Oxford
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
1662 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
272
30
liver
147
122
1
bone tissue
58
body of pancreas
2
35
2
2
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