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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
88
ChIP-seq
34
single cell RNA-seq
27
snATAC-seq
10
ATAC-seq
6
WGBS
Assay category
224
Transcription
88
DNA binding
37
DNA accessibility
6
DNA methylation
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
136
May, 2021
76
February, 2023
45
February, 2021
45
May, 2020
41
September, 2020
7
August, 2020
5
March, 2020
Available data
196
bigWig
186
bam
169
fastq
153
zippedFastqFolder
104
tsv
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
355
Homo sapiens
Biosample type
349
primary cell
4
cell line
2
tissue
Organ
75
pancreas
73
epithelium
Project
AMP
186
T1D
169
HPAP
Genome assembly (visualization)
196
GRCh38
186
hg19
Lab
180
Kyle Gaulton, UCSD
169
Klaus Kaestner, Upenn
6
AMP-T2D consortium
Audit category:
27
audit script error
8
inconsistent ontology term
lab.title!
Anna Gloyn, Oxford
award.project!
AMP
BIOSAMPLE
ASSAY
355 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
primary cell
monocyte
53
84
Langerhans cell
34
27
pancreatic alpha cell
42
7
6
exocrine cell
39
pancreatic beta cell
11
3
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cell line
EndoC_BH1
2
2
tissue
islet of Langerhans
2
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